An XML-Based Analysis Tool for Gene Prediction Results 


Vol. 12,  No. 5, pp. 755-764, Oct.  2005
10.3745/KIPSTD.2005.12.5.755


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  Abstract

Recently, as it is considered more important to identify the function of all unknown genes in living things, many tools for gene prediction have been developed to identify genes in the DNA sequences. Unfortunately, most of those tools use their own schemes to represent their programs results, requiring researchers to make additional efforts to understand the result generated by them. So, it is desirable to provide a standardized method of representing predicted gene information, which makes it possible to automatically produce the predicted results for a given set of gene data. In this paper, we describe an effective XML representation for various predicted gene information, and, present an XML-based analysis tool for gene predication results based on this representation. The developed system helps users of gene prediction tools to conveniently analyze the predicted results and to automatically produce the statistical results of the prediction. To show the usefulness of the tool, we applied our programs to the results generated by GenScan and GeneID, which are widely used gene prediction systems.

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[IEEE Style]

J. H. Kim, S. H. Byun, M. J. Lee, Y. S. Park, "An XML-Based Analysis Tool for Gene Prediction Results," The KIPS Transactions:PartD, vol. 12, no. 5, pp. 755-764, 2005. DOI: 10.3745/KIPSTD.2005.12.5.755.

[ACM Style]

Jin Hong Kim, Sang Hee Byun, Myung Joon Lee, and Yang Su Park. 2005. An XML-Based Analysis Tool for Gene Prediction Results. The KIPS Transactions:PartD, 12, 5, (2005), 755-764. DOI: 10.3745/KIPSTD.2005.12.5.755.

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